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Velvet assembler
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21	Cox et al. BMC Bioinformatics 2010, 11:485 http://www.biomedcentral.com[removed] SOFTWARE Open Access Add to Reading List Source URL: solexaqa.sourceforge.net Language: English - Date: 2013-01-20 02:49:58 Biochemistry DNA sequencing Microarrays FASTQ format Genomics Sequence assembly Velvet assembler Phred quality score Illumina Biology Molecular biology Bioinformatics
22	Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer Pierre Peterlongo∗1 , Rayan Chikhi2 1 INRIA 2 ENS Add to Reading List Source URL: alcovna.genouest.org Language: English - Date: 2012-03-26 05:36:23 Velvet assembler Applied mathematics Bioinformatics Sequence assembly Science
23	INVESTIGATION PRICE: Software for the Targeted Assembly of Components of (Meta) Genomic Sequence Data J. Graham Ruby,,†,1 Priya Bellare,†,‡,2 and Joseph L. DeRisi,† Add to Reading List Source URL: derisilab.ucsf.edu Language: English - Date: 2013-10-30 16:40:15 Molecular biology Genomics DNA Contig Shotgun sequencing Expressed sequence tag Sequence assembly Velvet assembler BLAST Biology Bioinformatics Genetics
24	A Quick Guide to Velvet and Oases VELVET is a simple yet efficient genomic denovo assembler based on de Bruijn graphs, taking advantage of short and longer reads as well. This widely used package in Next Generation Seque Add to Reading List Source URL: www.embnet.org Language: English - Date: 2014-06-09 12:22:32 Molecular biology Gene expression RNA DNA sequencing Velvet assembler FASTQ format Sequence assembly Contig RNA-Seq Biology Bioinformatics Science
25	Nextera Sample Prep for the MiSeq System Add to Reading List Source URL: res.illumina.com Language: English - Date: 2013-07-16 12:25:30 DNA sequencing Contig Full genome sequencing Ion semiconductor sequencing Illumina Genome project Velvet assembler Sequencing Microfluidic Sanger sequencing Biology Molecular biology Genetics
26	Production of a reference transcriptome and transcriptomic database (EdwardsiellaBase) for the lined sea anemone, Edwardsiella lineata, a Add to Reading List Source URL: www.ncbi.nlm.nih.gov Language: English Genomics Gene expression Computational biology Molecular biology Starlet sea anemone Contig Expressed sequence tag Velvet assembler Transcriptome Biology Genetics Bioinformatics
27	Exploring the gonad transcriptome of two extreme male pigs with RNA-seq Add to Reading List Source URL: www.ncbi.nlm.nih.gov Language: English Molecular biology DNA sequencing Gene expression Genomics De novo transcriptome assembly Contig Velvet assembler Sequence assembly RNA-Seq Biology Bioinformatics Genetics
28	SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds Add to Reading List Source URL: www.ncbi.nlm.nih.gov Language: English Genomics Molecular biology DNA sequencing DNA Sequence assembly Genome project Velvet assembler Contig N50 Biology Bioinformatics Genetics
29	RNA sequencing read depth requirement for optimal transcriptome coverage in Hevea brasiliensis Chow et al. Chow et al. BMC Research Notes 2014, 7:69 http://www.biomedcentral.com[removed] Add to Reading List Source URL: www.ncbi.nlm.nih.gov Language: English Gene expression Bioinformatics DNA sequencing RNA De novo transcriptome assembly RNA-Seq Sequence assembly Transcriptome Velvet assembler Biology Biochemistry Molecular biology
30	Velvet: de novo assembly using very short reads Daniel Zerbino and Ewan Birney Add to Reading List Source URL: www.ebi.ac.uk Language: English - Date: 2007-09-17 06:22:31 Genetics Molecular biology Velvet assembler Genomics Sequence assembly Contig Illumina De novo transcriptome assembly DNA sequencing Bioinformatics Biology

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